PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn386171
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 963aa    MW: 107535 Da    PI: 9.5687
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn386171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-094681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++ E e++++a +++G++ Wk++a+ +  +R+ +++
       Achn386171 46 HWSKKELERFYEAYRKYGKD-WKKVAAVVK-NRSTEMV 81
                     5*****************99.********9.**98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-104291IPR009057Homeodomain-like
PROSITE profilePS512939.2284293IPR017884SANT domain
SMARTSM007175.8E-54391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-54681IPR009057Homeodomain-like
PfamPF002497.0E-84681IPR001005SANT/Myb domain
CDDcd001671.09E-54781No hitNo description
SMARTSM011354.3E-58596697IPR033471DIRP domain
PfamPF065846.7E-33596696IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MAPTRKTRSV NKRFTYVDKV SPSKDGEDVN KSAQRKRKLS DMLGSHWSKK ELERFYEAYR  60
KYGKDWKKVA AVVKNRSTEM VEALYSMNKA YLSLPEGTAS VVGLIAMMTD HYCNLDGSDS  120
EQESNDGTVT SNKPQKHVRG KSQLNTSKGS DELFISHSQP VASSSGCQMI LKKKRSGALE  180
ESFIFQLVIR IAYGKIASKF AAGTRPRVVG KRTPRFPISY SHDKVNREKF FSSARQGLKL  240
KVDASVDDVA HEVALALAEA SQRGGSAQVS QTPNRRLIQG DERMRAELEL TSAKLDSEID  300
EDGFEGSLGS TEADNEHFAR DKKYLMEIQD HGTAEARKGR RLNIKKLEGD DSINNHLDDI  360
KEACSATEGH LSAFREKLEF EVVAGKVARS SSLVSRKKSK KVLFTRDEGS AFDALQTLAD  420
LSLMMPATAT ENESSVHIKE DDDDLVASHQ RDRSKSSRVK GKGNQLISGF EPFALKTSKL  480
GKGSALDVSA IPEAKEDPQQ STAKISRKKQ KTLASKARDA GKKILSKGKR SSYSILQQKQ  540
GKSVGHLEHS ASSTNPREGK DDSALSTVQI PIANQEKVSN CLSNRHLRRW CAFEWFYSAV  600
DYPWFAKREF VEYLNHVGLG HVPRLTRVEW GVIRSSLGKP RRFSEQFLSE EKEKLNQYRE  660
SVRTHYTELR AGTRQGLPTD LARPLSVGQR VTAIHPRTRE IHDGSVLTVD HTRCRVQFDR  720
PELGVEFVLD IDCMPIKPLD NLPTSLARNE VGIDKFFENL NELKTNGPAK DQKPEEYKKP  780
SHGENLEHLD VPSNVSPSTY PMSNLLKQAK GAPANSNLQD KIGFKETANN QQSVDSQPYI  840
RVQIQAKEAD VQALAELTRA LDKKEAVMSE LRYMNDDVVE KQRDGDSALK DSEPFKKQYA  900
AVLVQLNEKC TERQFPPADV AEILDSAVTG LQPRCSQNLP LYSDIQKCMG IIRNQILALI  960
PT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649755.10.0PREDICTED: protein ALWAYS EARLY 3
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A061ENN10.0A0A061ENN1_THECC; Always early, putative isoform 1
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding